ETL Pipeline Documentation: Here are my Tips and Tricks!

This blog post shows you how to properly document your extract, transform, and load code.

ETL pipeline documentation is necessary on all team data projects. In fact, I make ETL pipeline documentation every time I have a project where I am doing ETL, even if I’m the only one doing it. Extract, transform, and load (ETL) protocols are typically quite complex. Even what initially looks like a simple process of transforming three native variables into nine analytic variables – as I demonstrate in this video – turns out to be actually rather complex.

Watch my video to get a demonstration on how to document your ETL pipeline

ETL Pipeline Documentation: Different Types

In the video, I classify ETL pipeline documentation into two categories: the minimum necessary, and additional helpful files that can be added. What I list under the “minimum necessary” is basically two items:

  1. A complete data dictionary, with well-documented picklists and available crosswalks, and
  2. A copy of the final analytic dataset.

You can download all of these files from GitHub.

Data Dictionary

The main part of a data dictionary provides a list of names of variables in a data table, and provides necessary information about them, such as what they mean, how they are populated, and in what format they are stored. Picklists are like dropdown lists, where a value refers to a level in a categorical variable (e.g., 1 = Yes, 2 = No, 9 = Don’t Know). Crosswalks are like picklists on steroids – meaning they are very extensive picklists that can be joined to the main dataset to add other columns to enhance its analytic utility.

This is an example of the type of documentation you can include your data dictionary.

Analytic Datasets for Research

When you engage in ETL, you are transforming the native extract you received from the data provider into an analytic dataset on which you can base your analysis for research. Through discrete transformation steps, your ETL code transforms the native extract into the analytic dataset.

Other ETL Pipeline Documentation

Other documentation that can be helpful is:

  1. Well-organized ETL code
  2. An ETL pipeline diagram
  3. Example deidentified source data.

Well-organized ETL Code

Well-organized ETL code is modular, and includes only one or a few transformation steps per code file. The code files use naming conventions that make the code line up in order of operation. Other naming conventions (e.g., for datasets and variables) are applied. To learn more about this, read Chapter 4 of my book, “Mastering SAS Programming for Data Warehousing”.

ETL Pipeline Diagram

This ETL pipeline diagram is basically a map that summarizes the code. It goes hand in hand with the code and the transformation steps. If you have trouble with a particular variable in the analytic dataset, this diagram can help you troubleshoot which code to open and modify. Well-organized code and diagrams like these are necessary if you want to automate your ETL code using SAS or other programs. I go over ETL code automation in Chapter 8 of my SAS book. The videos below from SAS provide an example of doing this in SAS Data Integration Studio.

SAS provided this video to show you how to automate your ETL pipeline in SAS DI Studio.
In SAS Data Integration Studio, a job refers to a pipeline you can create, save, and come back to edit.

Example of Deidentified Source Data

Sometimes if you get confused about data, you can ask your data provider to make up a few fake records that follow validation rules for you.

These data are obviously faked – but they serve to show the receiver of this faked data the format, structure, and some business rules of the data. Receiving a faked dataset like this – even if it is only a few rows – can give you the opportunity to start building transformation code (especially complex date handling), even before you receive the real data from the provider.

Updated February 22, 2023. Revised Banners June 18, 2023.

Read all of our data science blog posts!

Apply Weights? It’s Easy in R with the Survey Package!

Apply weights to get weighted proportions and counts! Read my blog post to learn how [...]

Make Categorical Variable Out of Continuous Variable

Make categorical variables by cutting up continuous ones. But where to put the boundaries? Get [...]

Remove Rows in R with the Subset Command

Remove rows by criteria is a common ETL operation – and my blog post shows [...]

CDC Wonder for Studying Vaccine Adverse Events: The Shameful State of US Open Government Data

CDC Wonder is an online query portal that serves as a gateway to many government [...]

AI Careers: Riding the Bubble

AI careers are not easy to navigate. Read my blog post for foolproof advice for [...]

Descriptive Analysis of Black Friday Death Count Database: Creative Classification

Descriptive analysis of Black Friday Death Count Database provides an example of how creative classification [...]

Classification Crosswalks: Strategies in Data Transformation

Classification crosswalks are easy to make, and can help you reduce cardinality in categorical variables, [...]

FAERS Data: Getting Creative with an Adverse Event Surveillance Dashboard

FAERS data are like any post-market surveillance pharmacy data – notoriously messy. But if you [...]

Dataset Source Documentation: Necessary for Data Science Projects with Multiple Data Sources

Dataset source documentation is good to keep when you are doing an analysis with data [...]

Joins in Base R: Alternative to SQL-like dplyr

Joins in base R must be executed properly or you will lose data. Read my [...]

NHANES Data: Pitfalls, Pranks, Possibilities, and Practical Advice

NHANES data piqued your interest? It’s not all sunshine and roses. Read my blog post [...]

Color in Visualizations: Using it to its Full Communicative Advantage

Color in visualizations of data curation and other data science documentation can be used to [...]

Defaults in PowerPoint: Setting Them Up for Data Visualizations

Defaults in PowerPoint are set up for slides – not data visualizations. Read my blog [...]

Text and Arrows in Dataviz Can Greatly Improve Understanding

Text and arrows in dataviz, if used wisely, can help your audience understand something very [...]

Shapes and Images in Dataviz: Making Choices for Optimal Communication

Shapes and images in dataviz, if chosen wisely, can greatly enhance the communicative value of [...]

Table Editing in R is Easy! Here Are a Few Tricks…

Table editing in R is easier than in SAS, because you can refer to columns, [...]

R for Logistic Regression: Example from Epidemiology and Biostatistics

R for logistic regression in health data analytics is a reasonable choice, if you know [...]

1 Comments

Connecting SAS to Other Applications: Different Strategies

Connecting SAS to other applications is often necessary, and there are many ways to do [...]

Portfolio Project Examples for Independent Data Science Projects

Portfolio project examples are sometimes needed for newbies in data science who are looking to [...]

Project Management Terminology for Public Health Data Scientists

Project management terminology is often used around epidemiologists, biostatisticians, and health data scientists, and it’s [...]

Rapid Application Development Public Health Style

“Rapid application development” (RAD) refers to an approach to designing and developing computer applications. In [...]

Understanding Legacy Data in a Relational World

Understanding legacy data is necessary if you want to analyze datasets that are extracted from [...]

Front-end Decisions Impact Back-end Data (and Your Data Science Experience!)

Front-end decisions are made when applications are designed. They are even made when you design [...]

Reducing Query Cost (and Making Better Use of Your Time)

Reducing query cost is especially important in SAS – but do you know how to [...]

Curated Datasets: Great for Data Science Portfolio Projects!

Curated datasets are useful to know about if you want to do a data science [...]

Statistics Trivia for Data Scientists

Statistics trivia for data scientists will refresh your memory from the courses you’ve taken – [...]

Management Tips for Data Scientists

Management tips for data scientists can be used by anyone – at work and in [...]

REDCap Mess: How it Got There, and How to Clean it Up

REDCap mess happens often in research shops, and it’s an analysis showstopper! Read my blog [...]

GitHub Beginners in Data Science: Here’s an Easy Way to Start!

GitHub beginners – even in data science – often feel intimidated when starting their GitHub [...]

ETL Pipeline Documentation: Here are my Tips and Tricks!

ETL pipeline documentation is great for team communication as well as data stewardship! Read my [...]

Benchmarking Runtime is Different in SAS Compared to Other Programs

Benchmarking runtime is different in SAS compared to other programs, where you have to request [...]

End-to-End AI Pipelines: Can Academics Be Taught How to Do Them?

End-to-end AI pipelines are being created routinely in industry, and one complaint is that academics [...]

Referring to Columns in R by Name Rather than Number has Pros and Cons

Referring to columns in R can be done using both number and field name syntax. [...]

The Paste Command in R is Great for Labels on Plots and Reports

The paste command in R is used to concatenate strings. You can leverage the paste [...]

Coloring Plots in R using Hexadecimal Codes Makes Them Fabulous!

Recoloring plots in R? Want to learn how to use an image to inspire R [...]

Adding Error Bars to ggplot2 Plots Can be Made Easy Through Dataframe Structure

Adding error bars to ggplot2 in R plots is easiest if you include the width [...]

AI on the Edge: What it is, and Data Storage Challenges it Poses

“AI on the edge” was a new term for me that I learned from Marc [...]

Pie Chart ggplot Style is Surprisingly Hard! Here’s How I Did it

Pie chart ggplot style is surprisingly hard to make, mainly because ggplot2 did not give [...]

Time Series Plots in R Using ggplot2 Are Ultimately Customizable

Time series plots in R are totally customizable using the ggplot2 package, and can come [...]

Data Curation Solution to Confusing Options in R Package UpSetR

Data curation solution that I posted recently with my blog post showing how to do [...]

Making Upset Plots with R Package UpSetR Helps Visualize Patterns of Attributes

Making upset plots with R package UpSetR is an easy way to visualize patterns of [...]

4 Comments

Making Box Plots Different Ways is Easy in R!

Making box plots in R affords you many different approaches and features. My blog post [...]

Convert CSV to RDS When Using R for Easier Data Handling

Convert CSV to RDS is what you want to do if you are working with [...]

GPower Case Example Shows How to Calculate and Document Sample Size

GPower case example shows a use-case where we needed to select an outcome measure for [...]

Querying the GHDx Database: Demonstration and Review of Application

Querying the GHDx database is challenging because of its difficult user interface, but mastering it [...]

Variable Names in SAS and R Have Different Restrictions and Rules

Variable names in SAS and R are subject to different “rules and regulations”, and these [...]

Referring to Variables in Processing Data is Different in SAS Compared to R

Referring to variables in processing is different conceptually when thinking about SAS compared to R. [...]

Counting Rows in SAS and R Use Totally Different Strategies

Counting rows in SAS and R is approached differently, because the two programs process data [...]

Native Formats in SAS and R for Data Are Different: Here’s How!

Native formats in SAS and R of data objects have different qualities – and there [...]

SAS-R Integration Example: Transform in R, Analyze in SAS!

Looking for a SAS-R integration example that uses the best of both worlds? I show [...]

Dumbbell Plot for Comparison of Rated Items: Which is Rated More Highly – Harvard or the U of MN?

Want to compare multiple rankings on two competing items – like hotels, restaurants, or colleges? [...]

2 Comments

Data for Meta-analysis Need to be Prepared a Certain Way – Here’s How

Getting data for meta-analysis together can be challenging, so I walk you through the simple [...]

Sort Order, Formats, and Operators: A Tour of The SAS Documentation Page

Get to know three of my favorite SAS documentation pages: the one with sort order, [...]

Confused when Downloading BRFSS Data? Here is a Guide

I use the datasets from the Behavioral Risk Factor Surveillance Survey (BRFSS) to demonstrate in [...]

2 Comments

Doing Surveys? Try my R Likert Plot Data Hack!

I love the Likert package in R, and use it often to visualize data. The [...]

2 Comments

I Used the R Package EpiCurve to Make an Epidemiologic Curve. Here’s How It Turned Out.

With all this talk about “flattening the curve” of the coronavirus, I thought I would [...]

Which Independent Variables Belong in a Regression Equation? We Don’t All Agree, But Here’s What I Do.

During my failed attempt to get a PhD from the University of South Florida, my [...]

ETL pipeline documentation is great for team communication as well as data stewardship! Read my blog post to learn my tips and tricks.

Leave a Reply

Your email address will not be published. Required fields are marked *

This site uses Akismet to reduce spam. Learn how your comment data is processed.

Verified by MonsterInsights