Make categorical variable out of a continuous one is sometimes needed in biostatistics, especially if you encounter issues with distribution. Here is an example of some code where I do that using an NHANES dataset as demonstration (which you can read about here).
If you watch the video, you’ll see that I’m working with a blood pressure dataset called BLPS_a make categorical variables. The continuous variable I’m using is a systolic blood pressure (SBP) reading named BPXOSY1. Before I make variable, I want to view the distribution, so I use the hist command to get a histogram, and the quantile command to get quartiles.
hist(BLPS_a$BPXOSY1) quantile(BLPS_a$BPXOSY1, na.rm = TRUE)
Here is what the output looks like.
You can use this output to determine data-driven cutpoints to turn your continuous variable to make categorical variable. However, we want to make empirical cutpoints. These are based on the American Heart Association classifications for SBP.
- These are the classifications we are using.
- It can be helpful to use empirical classifications even if they are not data-driven.
- That way, they can be compared to other data classified the same way.
Wondering about your career? Concerned you are not moving forward?
Schedule a free consultation, and get advice from a public health data science professional!
Free consultationYou will see in the code below how I executed those boundaries using the conditions in the code. I make the variable BPLSGrp through executing those criteria. Then I check it with a table command.
BLPS_a$BLPSGrp <- 9 BLPS_a$BLPSGrp[BLPS_a$BPXOSY1 < 120] <- 1 BLPS_a$BLPSGrp[BLPS_a$BPXOSY1 >= 120 & BLPS_a$BPXOSY1 < 130] <- 2 BLPS_a$BLPSGrp[BLPS_a$BPXOSY1 >= 130] <- 3 table(BLPS_a$BPXOSY1, BLPS_a$BLPSGrp, useNA = c("always"))
Read all of our data science blog posts!
Make Categorical Variable Out of Continuous Variable
Make categorical variables by cutting up continuous ones. But where to put the boundaries? Get [...]
Nov
Remove Rows in R with the Subset Command
Remove rows by criteria is a common ETL operation – and my blog post shows [...]
Oct
CDC Wonder for Studying Vaccine Adverse Events: The Shameful State of US Open Government Data
CDC Wonder is an online query portal that serves as a gateway to many government [...]
Jun
AI Careers: Riding the Bubble
AI careers are not easy to navigate. Read my blog post for foolproof advice for [...]
Jun
Descriptive Analysis of Black Friday Death Count Database: Creative Classification
Descriptive analysis of Black Friday Death Count Database provides an example of how creative classification [...]
Nov
Classification Crosswalks: Strategies in Data Transformation
Classification crosswalks are easy to make, and can help you reduce cardinality in categorical variables, [...]
Nov
FAERS Data: Getting Creative with an Adverse Event Surveillance Dashboard
FAERS data are like any post-market surveillance pharmacy data – notoriously messy. But if you [...]
Nov
Dataset Source Documentation: Necessary for Data Science Projects with Multiple Data Sources
Dataset source documentation is good to keep when you are doing an analysis with data [...]
Nov
Joins in Base R: Alternative to SQL-like dplyr
Joins in base R must be executed properly or you will lose data. Read my [...]
Nov
NHANES Data: Pitfalls, Pranks, Possibilities, and Practical Advice
NHANES data piqued your interest? It’s not all sunshine and roses. Read my blog post [...]
Nov
Color in Visualizations: Using it to its Full Communicative Advantage
Color in visualizations of data curation and other data science documentation can be used to [...]
Oct
Defaults in PowerPoint: Setting Them Up for Data Visualizations
Defaults in PowerPoint are set up for slides – not data visualizations. Read my blog [...]
Oct
Text and Arrows in Dataviz Can Greatly Improve Understanding
Text and arrows in dataviz, if used wisely, can help your audience understand something very [...]
Oct
Shapes and Images in Dataviz: Making Choices for Optimal Communication
Shapes and images in dataviz, if chosen wisely, can greatly enhance the communicative value of [...]
Oct
Table Editing in R is Easy! Here Are a Few Tricks…
Table editing in R is easier than in SAS, because you can refer to columns, [...]
Aug
R for Logistic Regression: Example from Epidemiology and Biostatistics
R for logistic regression in health data analytics is a reasonable choice, if you know [...]
1 Comments
Aug
Connecting SAS to Other Applications: Different Strategies
Connecting SAS to other applications is often necessary, and there are many ways to do [...]
Jul
Portfolio Project Examples for Independent Data Science Projects
Portfolio project examples are sometimes needed for newbies in data science who are looking to [...]
Jul
Project Management Terminology for Public Health Data Scientists
Project management terminology is often used around epidemiologists, biostatisticians, and health data scientists, and it’s [...]
Jun
Rapid Application Development Public Health Style
“Rapid application development” (RAD) refers to an approach to designing and developing computer applications. In [...]
Jun
Understanding Legacy Data in a Relational World
Understanding legacy data is necessary if you want to analyze datasets that are extracted from [...]
Jun
Front-end Decisions Impact Back-end Data (and Your Data Science Experience!)
Front-end decisions are made when applications are designed. They are even made when you design [...]
Jun
Reducing Query Cost (and Making Better Use of Your Time)
Reducing query cost is especially important in SAS – but do you know how to [...]
Jun
Curated Datasets: Great for Data Science Portfolio Projects!
Curated datasets are useful to know about if you want to do a data science [...]
May
Statistics Trivia for Data Scientists
Statistics trivia for data scientists will refresh your memory from the courses you’ve taken – [...]
Apr
Management Tips for Data Scientists
Management tips for data scientists can be used by anyone – at work and in [...]
Mar
REDCap Mess: How it Got There, and How to Clean it Up
REDCap mess happens often in research shops, and it’s an analysis showstopper! Read my blog [...]
Mar
GitHub Beginners in Data Science: Here’s an Easy Way to Start!
GitHub beginners – even in data science – often feel intimidated when starting their GitHub [...]
Feb
ETL Pipeline Documentation: Here are my Tips and Tricks!
ETL pipeline documentation is great for team communication as well as data stewardship! Read my [...]
Feb
Benchmarking Runtime is Different in SAS Compared to Other Programs
Benchmarking runtime is different in SAS compared to other programs, where you have to request [...]
Dec
End-to-End AI Pipelines: Can Academics Be Taught How to Do Them?
End-to-end AI pipelines are being created routinely in industry, and one complaint is that academics [...]
Nov
Referring to Columns in R by Name Rather than Number has Pros and Cons
Referring to columns in R can be done using both number and field name syntax. [...]
Oct
The Paste Command in R is Great for Labels on Plots and Reports
The paste command in R is used to concatenate strings. You can leverage the paste [...]
Oct
Coloring Plots in R using Hexadecimal Codes Makes Them Fabulous!
Recoloring plots in R? Want to learn how to use an image to inspire R [...]
Oct
Adding Error Bars to ggplot2 Plots Can be Made Easy Through Dataframe Structure
Adding error bars to ggplot2 in R plots is easiest if you include the width [...]
Oct
AI on the Edge: What it is, and Data Storage Challenges it Poses
“AI on the edge” was a new term for me that I learned from Marc [...]
Jun
Pie Chart ggplot Style is Surprisingly Hard! Here’s How I Did it
Pie chart ggplot style is surprisingly hard to make, mainly because ggplot2 did not give [...]
Apr
Time Series Plots in R Using ggplot2 Are Ultimately Customizable
Time series plots in R are totally customizable using the ggplot2 package, and can come [...]
Apr
Data Curation Solution to Confusing Options in R Package UpSetR
Data curation solution that I posted recently with my blog post showing how to do [...]
Apr
Making Upset Plots with R Package UpSetR Helps Visualize Patterns of Attributes
Making upset plots with R package UpSetR is an easy way to visualize patterns of [...]
4 Comments
Apr
Making Box Plots Different Ways is Easy in R!
Making box plots in R affords you many different approaches and features. My blog post [...]
Mar
Convert CSV to RDS When Using R for Easier Data Handling
Convert CSV to RDS is what you want to do if you are working with [...]
Mar
GPower Case Example Shows How to Calculate and Document Sample Size
GPower case example shows a use-case where we needed to select an outcome measure for [...]
Feb
Querying the GHDx Database: Demonstration and Review of Application
Querying the GHDx database is challenging because of its difficult user interface, but mastering it [...]
Feb
Variable Names in SAS and R Have Different Restrictions and Rules
Variable names in SAS and R are subject to different “rules and regulations”, and these [...]
Feb
Referring to Variables in Processing Data is Different in SAS Compared to R
Referring to variables in processing is different conceptually when thinking about SAS compared to R. [...]
Jan
Counting Rows in SAS and R Use Totally Different Strategies
Counting rows in SAS and R is approached differently, because the two programs process data [...]
Jan
Native Formats in SAS and R for Data Are Different: Here’s How!
Native formats in SAS and R of data objects have different qualities – and there [...]
Jan
SAS-R Integration Example: Transform in R, Analyze in SAS!
Looking for a SAS-R integration example that uses the best of both worlds? I show [...]
Dec
Dumbbell Plot for Comparison of Rated Items: Which is Rated More Highly – Harvard or the U of MN?
Want to compare multiple rankings on two competing items – like hotels, restaurants, or colleges? [...]
2 Comments
Sep
Data for Meta-analysis Need to be Prepared a Certain Way – Here’s How
Getting data for meta-analysis together can be challenging, so I walk you through the simple [...]
Jul
Sort Order, Formats, and Operators: A Tour of The SAS Documentation Page
Get to know three of my favorite SAS documentation pages: the one with sort order, [...]
Nov
Confused when Downloading BRFSS Data? Here is a Guide
I use the datasets from the Behavioral Risk Factor Surveillance Survey (BRFSS) to demonstrate in [...]
2 Comments
Oct
Doing Surveys? Try my R Likert Plot Data Hack!
I love the Likert package in R, and use it often to visualize data. The [...]
2 Comments
Oct
I Used the R Package EpiCurve to Make an Epidemiologic Curve. Here’s How It Turned Out.
With all this talk about “flattening the curve” of the coronavirus, I thought I would [...]
Mar
Which Independent Variables Belong in a Regression Equation? We Don’t All Agree, But Here’s What I Do.
During my failed attempt to get a PhD from the University of South Florida, my [...]
Aug
Make categorical variables by cutting up continuous ones. But where to put the boundaries? Get advice on my blog!